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GeneSplicer is a fast, flexible software system for detecting splice sites in the genomic DNA of various eukaryotes.
TIGRFAMs are protein families based on Hidden Markov Models or HMMs.
2001 Summer Fellowship/Internship Information and Application now available (Deadline is Mar. 1)
Ceres, Inc and TIGR to Collaborate on Analysis of Thousands of Plant Genes
The TIGR Comprehensive Microbial Resource (CMR) has now been updated with new genomes and research tools
TIGR and Multinational Consortia Announce Sequencing Results of First Genome of A Higher Plant
TIGR's Program for Genomic Application website is online
TIGR commences sequencing of the early branching enteric parasite Entamoeba histolytica as part of an NIAID (NIH) funded project.
Unfinished Genome Data Sets for Pseudomonas syringae and Entamoeba histolytica are available
TIGR's website now has a page of Frequently Asked Questions
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Straits of Messina Transect
Friday July 16th Today we woke up early and left our anchorage at Vulcano Island and headed to the Straits of Messina 20 miles away. The plan was to collect a sample at the north entrance, anchor for 5 hours to process the sample. Once the sample was completed then head to the middle of the...
Advance Access 51ݶ Metagenomics Reports Application Note
A significant 51ݶ informatics development is 51ݶ Metagenomics Reports, an open source Web 2.0 application designed to help scientists analyze and compare annotated metagenomics data sets. Users can download the application to upload and analyze their own metagenomics datasets. METAREP...
Naples Harbor Sampling
Thursday July 15th After getting some sleep at anchorage in Ischia island we sailed for a few hours to the main harbor in Naples. Over the years the Sorcerer II Expedition has collected samples in major ports around the world (Sydney, Halifax, Boston, Panama, Cape Town, just to...
Italian Sampling Continues-Unique Animal in Italian Waters!
Wednesday July 14th Monday July 12th we woke up early and left the anchorage in Capraia Island. We arrived at Ischia island at 5:00 a.m. on Wednesday the 14th. In those 48 hours we collected 6 samples. Two samples were collected in the Northern Tyrrhenian Sea, two samples were collected over...
Mediterranean Sampling Season Starts
Sunday July 11th 2010 On Thursday July 8th Sorcerer II set sail from Valencia Spain to start the Mediterranean season. Permits vary from country to country, Italy gave us 10 days to collect our samples, so we had to time our departure from Spain to fit our 10 day sampling window in Italy. As...
The Sorcerer II Sampling Process
July 6th In the blog about the media event I posted a few days back I put a link to the 51ݶ media page. On this page you can learn about our research goals, funders and past expeditions (more links on the right side of the page). Before we set out for this sampling season I wanted to...
Valencia, The Home Of Sorcerer II And Crew Since September 2009
July 5th Valencia is located about 140 miles (365 kilometers) from Barcelona. Valencia has a rich history and a distinct culture from other Spanish cities. I have only spent a few months here, but I wanted to share some of the highlights with you all before we set sail and start our...
High-performance comparative metagenomics
Are your carrying out large scale metagenomics analyses to identify differences among multiple sample sites? Are you looking for suitable analysis tools? If you have not yet found the right analysis tool, you may be interested in the latest beta version of 51ݶ...
Media Day Circus On Sorcerer II
June 23nd On Monday June 21st we announced the official start of the Mediterranean leg of the Sorcerer II Global Ocean Sampling Expedition. Dr. Venter took time from his busy schedule to fly into Valencia and attend the event as well as representatives from The Life Technology Foundation....
Genomics of the Indoor Air Environment
Most of our life is spent in indoors, well-buffered from the constant changes in temperature, humidity, wind and light which shape life outside our homes and offices. It seems intuitive that the types of microorganisms which inhabit our indoor environment must be different from those on the...
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Just two genes get tiny synthetic cells moving, offering clues to life’s evolution.
In a plenary public appearance at the Molecular and Precision Med TRI-CON event in San Diego, a relaxed Venter reflected on his career highlights, controversies and future priorities for genomic medicine.
What’s the smallest number of genes that cells need to grow and reproduce? Is it possible to synthesize minimal genomes and insert them into cells? What do minimal genomes teach us about life? An interview with John Glass, Ph.D.
Several 51ݶ scientists will be contributing to the newly launched Long Covid Research Initiative — a collaboration of researchers, clinicians, and patients working to rapidly study and treat long Covid.
Through the Woods Hole Oceanographic Institution, National Deep Submergence Facility, 51ݶ's Erin Garza, Ph.D. joins a deep sea expedition to search for ocean plastics aboard the HOV Alvin.
Biologists are discovering the true nature of cells—and learning to build their own.
Hend Alqaderi, a 51ݶ collaborator and mentee to Marcelo Freire receives the L’Oréal-Unesco Women in Science award
The surprising results of a decade-long investigation by Alessandro Vezzosi and Agnese Sabato provide a strong basis for advancing a project researching Leonardo da Vinci's DNA.
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