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Publications

GeroScience. 2021-04-01; 43.2: 593-606.
Protein signatures from blood plasma and urine suggest changes in vascular function and IL-12 signaling in elderly with a history of chronic diseases compared with an age-matched healthy cohort
Yu Y, Singh H, Kwon K, Tsitrin T, Petrini J, Nelson KE, Pieper R
PMID: 32974878
PLoS computational biology. 2021-03-29; 17.3: e1008857.
Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach
Espinoza JL, Dupont CL, O'Rourke A, Beyhan S, Morales P, Spoering A, Meyer KJ, Chan AP, Choi Y, Nierman WC, Lewis K, Nelson KE
PMID: 33780444
Journal of experimental botany. 2021-03-29; 72.7: 2491-2500.
Improved Spirodela polyrhiza genome and proteomic analyses reveal a conserved chromosomal structure with high abundance of chloroplastic proteins favoring energy production
Harkess A, McLoughlin F, Bilkey N, Elliott K, Emenecker R, Mattoon E, Miller K, Czymmek K, Vierstra RD, Meyers BC, Michael TP
PMID: 33454741
Frontiers in microbiology. 2021-03-23; 12.644861.
Forensic Microbiome Database: A Tool for Forensic Geolocation Meta-Analysis Using Publicly Available 16S rRNA Microbiome Sequencing
Singh H, Clarke T, Brinkac L, Greco C, Nelson KE
PMID: 33833745
mSphere. 2021-03-17; 6.2:
Erratum for Gomez et al., "Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints"
Gomez A, Sharma AK, Mallott EK, Petrzelkova KJ, Jost Robinson CA, Yeoman CJ, Carbonero F, Pafco B, Rothman JM, Ulanov A, Vlckova K, Amato KR, Schnorr SL, Dominy NJ, Modry D, Todd A, Torralba M, Nelson KE, Burns MB, Blekhman R, Remis M, Stumpf RM, Wilson BA, Gaskins HR, Garber PA, White BA, Leigh SR
PMID: 33731474
Circulation research. 2021-03-05; 128.5: 570-584.
Influenza Causes MLKL-Driven Cardiac Proteome Remodeling During Convalescence
Lin YH, Platt M, Platt MP, Gilley RP, Brown D, Dube PH, Yu Y, Gonzalez-Juarbe N
PMID: 33501852
bioRxiv : the preprint server for biology. 2021-03-01;
Negligible impact of SARS-CoV-2 variants on CD4 + and CD8 + T cell reactivity in COVID-19 exposed donors and vaccinees
Tarke A, Sidney J, Methot N, Zhang Y, Dan JM, Goodwin B, Rubiro P, Sutherland A, da Silva Antunes R, Frazier A, Rawlings SA, Smith DM, Peters B, Scheuermann RH, Weiskopf D, Crotty S, Grifoni A, Sette A
PMID: 33688655
Frontiers in immunology. 2021-02-25; 12.619262.
The Impact of Oral-Gut Inflammation in Cerebral Palsy
Ferreira ACFM, Eveloff RJ, Freire M, Santos MTBR
PMID: 33717115
Cellular and molecular gastroenterology and hepatology. 2021-02-22; 12.1: 293-320.
Intestinal α1-2-Fucosylation Contributes to Obesity and Steatohepatitis in Mice
Zhou R, Llorente C, Cao J, Zaramela LS, Zeng S, Gao B, Li SZ, Welch RD, Huang FQ, Qi LW, Pan C, Huang Y, Zhou P, Beussen I, Zhang Y, Bryam G, Fiehn O, Wang L, Liu EH, Yu RT, Downes M, Evans RM, Goglin K, Fouts DE, Brenner DA, Bode L, Fan X, Zengler K, Schnabl B
PMID: 33631374
iScience. 2021-02-19; 24.2: 102114.
Reference-guided metagenomics reveals genome-level evidence of potential microbial transmission from the ISS environment to an astronaut's microbiome
Lee MD, O'Rourke A, Lorenzi H, Bebout BM, Dupont CL, Everroad RC
PMID: 33659879

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