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Publications

Genome research. 2021-10-01; 31.10: 1767-1780.
A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing
Aevermann BD, Aevermann B, Zhang Y, Novotny M, Keshk M, Bakken TE, Bakken T, Miller JA, Miller J, Hodge RD, Hodge R, Lelieveldt B, Lein ES, Lein E, Scheuermann RH
PMID: 34088715
Current opinion in biotechnology. 2021-10-01; 71.25-31.
Biotechnology for secure biocontainment designs in an emerging bioeconomy
Arnolds KL, Dahlin LR, Ding L, Wu C, Yu J, Xiong W, Zuniga C, Suzuki Y, Zengler K, Linger JG, Guarnieri MT
PMID: 34091124
Journal of virology. 2021-09-27; 95.20: e0101021.
Kinetic Multi-omic Analysis of Responses to SARS-CoV-2 Infection in a Model of Severe COVID-19
Cantwell AM, Singh H, Platt M, Yu Y, Lin YH, Ikeno Y, Hubbard G, Xiang Y, Gonzalez-Juarbe N, Dube PH
PMID: 34319784
Proceedings of the National Academy of Sciences of the United States of America. 2021-09-07; 118.36:
Influenza A viruses balance ER stress with host protein synthesis shutoff
Mazel-Sanchez B, Iwaszkiewicz J, Bonifacio JPP, Silva F, Niu C, Strohmeier S, Eletto D, Krammer F, Tan G, Zoete V, Hale BG, Schmolke M
PMID: 34479996
mSystems. 2021-08-31; 6.4: e0057121.
Pathogenic Vibrio Species Are Associated with Distinct Environmental Niches and Planktonic Taxa in Southern California (USA) Aquatic Microbiomes
Diner RE, Kaul D, Rabines A, Zheng H, Steele JA, Griffith JF, Allen AE
PMID: 34227831
Frontiers in genetics. 2021-08-30; 12.733674.
Rapid CRISPR/Cas9 Editing of Genotype IX African Swine Fever Virus Circulating in Eastern and Central Africa
Abkallo HM, Svitek N, Oduor B, Awino E, Henson SP, Oyola SO, Mwalimu S, Assad-Garcia N, Fuchs W, Vashee S, Steinaa L
PMID: 34527025
Microbiology resource announcements. 2021-08-26; 10.34: e0061521.
Draft Genome Sequence of Desulfurobacterium sp. Strain AV08, a Thermophilic Chemolithoautotroph Isolated from a Deep-Sea Hydrothermal Vent
Skoog EJ, Huber JA, Serres MH, Levesque A, Zeigler Allen L
PMID: 34435861
Science advances. 2021-08-13; 7.33:
Coral microbiome manipulation elicits metabolic and genetic restructuring to mitigate heat stress and evade mortality
Santoro EP, Borges RM, Espinoza JL, Freire M, Messias CSMA, Villela HDM, Pereira LM, Vilela CLS, Rosado JG, Cardoso PM, Rosado PM, Assis JM, Duarte GAS, Perna G, Rosado AS, Macrae A, Dupont CL, Nelson KE, Sweet MJ, Voolstra CR, Peixoto RS
PMID: 34389536
Science advances. 2021-08-06; 7.32:
Cellular costs underpin micronutrient limitation in phytoplankton
McCain JSP, Tagliabue A, Susko E, Achterberg EP, Allen AE, Bertrand EM
PMID: 34362734

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